Index

C

compute_is_aligned() (in module jass_preprocessing.map_reference) compute_is_flipped() (in module jass_preprocessing.map_reference) compute_sample_size() (in module jass_preprocessing.compute_score)

compute_snp_alignement() (in module jass_preprocessing.map_reference) compute_z_score() (in module jass_preprocessing.compute_score) convert_missing_values() (in module jass_preprocessing.map_gwas)

D

dna_complement() (in module jass_preprocessing.dna_utils)

dna_complement_base() (in module jass_preprocessing.dna_utils)

G

gwas_internal_link() (in module jass_preprocessing.map_gwas)

J

jass_preprocessing module, [1] jass_preprocessing.compute_score module, [1], [2] jass_preprocessing.dna_utils module, [1], [2]

jass_preprocessing.map_gwas module, [1], [2] jass_preprocessing.map_reference module, [1], [2] jass_preprocessing.save_output module, [1], [2]

M

map_columns_position() (in module jass_preprocessing.map_gwas) map_on_ref_panel() (in module jass_preprocessing.map_reference) module jass_preprocessing, [1] jass_preprocessing.compute_score, [1], [2] jass_preprocessing.dna_utils, [1], [2] jass_preprocessing.map_gwas, [1], [2] jass_preprocessing.map_reference, [1], [2] jass_preprocessing.save_output, [1], [2]

R

read_gwas() (in module jass_preprocessing.map_gwas)

read_reference() (in module jass_preprocessing.map_reference)

S

save_output() (in module jass_preprocessing.save_output)

save_output_by_chromosome() (in module jass_preprocessing.save_output)

W

walkfs() (in module jass_preprocessing.map_gwas)