JASS documentation

Contents:

• What is JASS: A python package to perform Multi-trait GWAS
• Installation
  • Installation with pip (recommended)
• Data preparation
  • How to generate input data for JASS
  • JASS input data
  • Data imputation (optional)
  • Creation of the JASS inittable
• Compute Multi-trait GWAS with JASS
  • Command Line example
  • Generated Results
  • Available multi-trait tests:
  • Access HDFStore components
• References
• Command line reference
  • Positional Arguments
  • Sub-commands
• Developer documentation
  • API

Indices and tables

• Index

• Module Index

• Search Page