jass.models.plots

This software allows to plot and store graphs which can be displayed on the web interface.

@author: vguillem, hmenager, hjulienn, clasry

Functions

create_global_plot(work_file_path, ...)	generate genome-wide manhattan plot for a given set of phenotypes
create_local_plot(work_file_path, ...)	generate a zoom plot for a given set of phenotypes
create_qq_plot(work_file_path, qq_plot_path)
create_qq_plot_by_GWAS(init_file_path, ...)
create_quadrant_plot(work_file_path, ...[, ...])	Create a "quadrant" plot that represent the joint test pvalue versus the univariate test pvalue for the most significant SNPs by genomic region.
replaceZeroes(df)	replace null values of df with the smallest non-zero value